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Home / Case study / Scientific Visualization of Microorganisms / Links
Design Case study

Scientific Visualization of Microorganisms

2D illustrations
by
Rashmi KumariandProf. Venkatesh Rajamanickam
IDC, IIT Bombay
Links
 
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Books:

  • Goodsell, David S., Franzen, M. A., Herman, T. et al. From atoms to cells: Using mesoscale landscapes to construct visual narratives. Journal of Molecular Biology (2018)
     
  • Zackowitz M.et al. It's the zika virus in action, drawn by a scientist-artist. NPR.org (2016)
     
  • Cohen, J. et al. Meet the scientist painter who turns deadly viruses into beautiful works of art". Science (2019)
     
  • Tversky, B. et al. What do sketches say about thinking? Proceedings of Association for Advancement of Artificial Intelligence (2002)
     
  • Munzner, T. et al. A Nested Model for Visualization Design and Validation. IEEE Transactions on Visualization and Computer Graphics (2009)
     
  • Ben-Harush K., Maimon T., Patla I., Villa E., Medalia O. et al. Visualizing cellular processes at the molecular level by cryo-electron tomography. Journal of Cell Science (2010).
     
  • Beck M., Baumeister W. et al. Cryo-electron tomography: Can it reveal the molecular sociology of cells in atomic detail? Trends in Cell Biology (2016).
     
  • Richardson J.S. et al. The anatomy and taxonomy of protein structure. Advances in Protein Chemistry (1981).
     
  • Gehlenborg, N., Wong, B.et al. Into the third dimension. Nature Methods (2012)
     
  • Goodsell D. S. et al. Cellular landscapes in watercolor. Journal of Biocommunication (2016).
     
  • McGill G. et al. Molecular movies… coming to a lecture near you. Cell (2008).
     

Research References for the Illustration of Mycoplasma Genitalium:

  • Svenstrup, H. F., Jensen, J. S., Gevaert, K., Birkelund, S., Christiansen, G. et al. Identification and characterization of immunogenic proteins of Mycoplasma genitalium. Journal of Clinical Microbiology (2006)
     
  • Burgos, R. et al. Mycoplasma Genitalium P140 and P110 cytadhesins are reciprocally stabilized and required for cell adhesion and terminal-organelle development. Journal of Bacteriology (2006)
     
  • McGowin, C. L., Totten, P. A. et al. The unique microbiology and molecular pathogenesis of Mycoplasma genitalium. Journal of Infectious Diseases (2017)
     
  • Taylor, R. D., Gilroy, C. B., Jensen, J. et al. The biology of Mycoplasma Genitalium. Venereology (2000)
     
  • Taylor, R. D., Jensen, J. et al. Mycoplasma Genitalium: from chrysalis to multicolored butterfly. Clinical Microbiology Reviews (2011)
     
  • Wasinger, V. C., Pollack, D. J., Smith, I. H. et al. The proteome of Mycoplasma genitalium. European Journal of Biochemistry (2001)
     

Research References for the Illustration of Sars Coronavirus:

  • Gui, M., Liu, X., Guo, D. et al. Electron microscopy studies of the coronavirus ribonucleoprotein complex. Protein Cell (2017)
     
  • Walls A. C., Tortorici M. A., Snijder J., Xiong X., Bosch B., Rey F. A., Veesler D. et al. Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion. (2017)
     
  • Li F. et al. Structure, function, and evolution of coronavirus spike proteins. Annual review of Virology (2016) [4] Neuman B. W., Adair B. D., Yoshioka C., Quispe J. D., Orca G., Kuhn P., Milligan R. A., Yeager M., Buchneier M. J. et al. The SARS Coronavirus nucleocapsid protein - forms and functions. Antiviral Research (2014)
     
  • Gui M., Liu X., Guo D., Zhang Z., Yin C. C., Chen Y., Xiang Y. et al. Electron microscopy studies of the coronavirus ribonucleoprotein complex. Protein Cell (2017)
     
  • Schoeman D., Fielding C. B. et al. Coronavirus envelope protein: current knowledge. Virology Journal (2019)
     

Research References for the Illustration of Influenza a Virus:

  • Szewczyk, B., Szewczyk, K. B., Krol, E. et al. Introduction to molecular biology of influenza A viruses.
     
  • Goodsell, D. S. et al. Illustrating the machinery of life. Viruses. Biochemistry and Molecular Biology Education (2012)
     
  • Arranz, R., Coloma, R., Chichon, F. J., et al. The structure of native influenza virion ribonucleoproteins. Science (2012)
     
  • Goldsmith, C. S., Metcalfe, M. G., Rollin, D. C., Shieh, W., Paddock, C. D., Xu, X., Zaki, S. R. et al. Ultrastructural characterization of pandemic (H1N1) 2009 virus. Emerging Infectious Diseases (2011)
     
  • Sriwilaijaroen, N., Suzuki, Y. et al. Molecular basis of the structure and function of H1 hemagglutinin of influenza virus. Proceedings of the Japan Academy. Series B, Physical and biological sciences (2012)
     
  • McAuley, J. L., Gilbertson, B. P., Trifkovic, S., Brown, L. E., McKimm-Breschkin, J. L. et al. Influenza virus neuraminidase structure and functions. Frontiers in Microbiology (2019)
     

Research References for the Illustration of Dengue Virus:

  • Junjhon, Jiraphan et al. Ultrastructural characterization and three-dimensional architecture of replication sites in dengue virus-infected mosquito cells. Journal of Virology (2014)
     
  • Heinz, F. X., Stiasny, K. et al. The antigenic structure of Zika and its relation to other Flaviviruses: Implications for infection and immunoprophylaxis. Microbiology and Molecular Biology Reviews (2017)
     
  • Zhang, W., Chipman, P. R., Corver, J., et al. Visualization of membrane protein domains by cryo-electron microscopy of dengue virus. Nature Structural and Molecular Biology (2003)
     
  • Byk, L. A., Gamarnik, A. V. et al. Properties and functions of the dengue virus capsid protein. Annual Review of Virology (2016)
     
  • Perera, R., Kuhn, R. J. et al. Structural proteomics of dengue virus. Current Opinion in Microbiology (2018)
     

Other Links:

  • Useful resource e-links related to 'Interaction Design'
  • Interaction Design at IDC, IIT Bombay


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